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getFormatting

Get data formatting settings from a loaded project. It returns a list with the same items as the arguments of formatData, where the header items correspond to formatted headers if they have been changed by Data Formatting, and in addition:

  • originalHeaders (character) - list of original names of the columns used for data formatting.

Usage

R
getFormatting()

See also

Examples

R
{
initializeLixoftConnectors(software = "pkanalix")
loadProject(paste0(getDemoPath(),"/0.data_formatting/DoseAndLOQ_manual.pkx"))
getFormatting()
}
#> $dataFile
#> [1] "C:/Users/FranoMihaljevic/lixoft/pkanalix/pkanalix2024R1/demos/0.data_formatting/data/units_multiple_BLQ_tags_data.csv"
#> 
#> $sheet
#> [1] ""
#> 
#> $headerLines
#> [1] 1 2
#> 
#> $originalHeaders
#> $originalHeaders$id
#> [1] "ID" ""  
#> 
#> $originalHeaders$time
#> [1] "TIME" "h"   
#> 
#> 
#> $headers
#>   id time 
#>    1    2 
#> 
#> $linesToExclude
#> list()
#> 
#> $observationSettings
#> distinguishWithObsId duplicateInformation 
#>                 TRUE                 TRUE 
#> 
#> $observations
#> $observations[[1]]
#> $observations[[1]]$censoring
#> $observations[[1]]$censoring[[1]]
#> $observations[[1]]$censoring[[1]]$limits
#> [1] 0.00 0.06
#> 
#> $observations[[1]]$censoring[[1]]$tags
#> [1] "BLQ1"
#> 
#> $observations[[1]]$censoring[[1]]$type
#> [1] "interval"
#> 
#> 
#> $observations[[1]]$censoring[[2]]
#> $observations[[1]]$censoring[[2]]$limits
#> [1] 0.0 0.1
#> 
#> $observations[[1]]$censoring[[2]]$tags
#> [1] "BLQ2"
#> 
#> $observations[[1]]$censoring[[2]]$type
#> [1] "interval"
#> 
#> 
#> 
#> $observations[[1]]$header
#> [1] "CONC_mg_L"
#> 
#> 
#> 
#> $treatmentSettings
#>         doseIntervalsAsOccasions duplicateObservationsAtDoseTimes 
#>                            FALSE                            FALSE 
#> 
#> $treatments
#> $treatments[[1]]
#> $treatments[[1]]$amount
#> [1] 600
#> 
#> $treatments[[1]]$times
#> [1] 0
#> 
#> 
#> 
#> $additionalColumns
#> list()
#> 
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