PKanalix

Parameters

The following page describes all the parameters computed in the non compartmental analysis.

PKANALIX NAME

DEFAULT ALIAS

PKPARMCD CDISC

UNITS

DESCRIPTION

FORMULA

Rsq

R squared

R2

unitless

Goodness of fit statistic for the λz regression

Rsq = 1 - sum(log(Conc) - pred) / sum(log(Conc)-mean(log(Conc)))

Rsq_adjusted

adjusted R squared

R2ADJ

unitless

Goodness of fit statistic for the λz regression, adjusted for the number of points

Rsq_adjusted = 1 - (1 - Rsq) * (No_points_lambda_z - 1) / (No_points_lambda_z - 2)

Corr_XY

Correlation

CORRXY

unitless

Correlation between time (X) and log concentration (Y) for the points used in the estimation of λz

Corr_XY = sqrt(Rsq)

No_points_lambda_z

Number of points

LAMZNPT

unitless

Number of points considered in the λz regression

_

Lambda_z

kel

LAMZ

1/time

First order rate constant associated with the terminal elimination phase for concentration data

Obtained from the λz linear regression
log(Conc) = Lambda_z_intercept - Lambda_z*t

Lambda_z_lower

kel Lower

LAMZLL

time

Lower limit on time for values to be included in the λz calculation

_

Lambda_z_upper

kel Upper

LAMZUL

time

Upper limit on time for values to be included in the λz calculation

_

HL_Lambda_z

T1/2

LAMZHL

time

Terminal half-life

HL_Lambda_z = ln(2)/Lambda_z

Lambda_z_intercept

Intercept

unitless

Intercept of the λz regression, i.e. value of the regression (in log-scale) at time 0.

Obtained from the λz linear regression
log(Conc) = Lambda_z_intercept - Lambda_z*t

Span

Span

unitless

Ratio between the sampling interval of the measurements used for the λz and the terminal half-life

Span = (Lambda_z_upper - Lambda_z_lower) / HL_Lambda_z

PKANALIX NAME

DEFAULT ALIAS

PKPARMCD

CDISC

UNITS

DESCRIPTION

FORMULA

Tlag

Tlag

TLAG

time

Tlag is the time prior to the first measurable (non-zero) concentration. Tlag is 0 if the first observation after the last dose is not 0 or LOQ. The value is set to 0 for non extravascular input.

[if intravenous]
Tlag = 0
[if extravascular]
Tlag =

T0

T0


time

Time of the dose

_

Dose

Dose


amount

Amount of the dose

_

N_Samples

Number of samples

unitless

Number of samples in the individuals (including zero or negative concentrations and BLQ not considered as “missing”)

_

C0

C0

C0

amount/ volume

If a PK profile does not contain an observation at dose time (C0), the following value is added
Extravascular and Infusion data. For single dose data, a concentration of zero.  For steady-state, the minimum observed during the dose interval.
IV Bolus data. Log-linear regression of first two data points to back-extrapolate C0.


Tmax

Tmax

TMAX

time

Time of maximum observed concentration.

[For non-steady-state data]
all points are considered.
[For steady-state data]
only points within the dosing interval (bounds included) are considered
If the maximum observed concentration is not unique, then the first maximum is used.

Cmax

Cmax

CMAX

amount/

volume

Maximum observed concentration, occurring at Tmax.

[For non-steady-state data]
all points are considered.
[For steady-state data]
only points within the dosing interval (bounds included) are considered
If the maximum observed concentration is not unique, then the first maximum is used.

Cmax_D

Cmax/Dose

CMAXD

1/volume

Maximum observed concentration divided by dose.

Cmax_D = Cmax/Dose

Tlast

Tlast

TLST

time

Last time point with measurable concentration


Clast

Clast

CLST

amount/

volume

Concentration of last time point with measurable concentration


AUClast

AUC0-tlast

AUCLST

time⋅amount/volume

Area under the curve from the time of dosing to the last measurable positive concentration. The calculation depends on the Integral method setting.

See

AUClast_D

AUC0-tlast/Dose

AUCLSTD

time/volume

Area under the curve from the time of dosing to the last measurable concentration divided by the dose.

AUClast_D = AUClast/Dose

AUMClast

AUMC0-tlast

AUMCLST

time2⋅amount/volume

Area under the moment curve (area under the curve of the product of concentration and time versus time) from the time of dosing to the last measurable concentration.

See “AUC calculation” for details

MRTlast

MRTlast

MRTIVLST

time

[if intravascular] Mean residence time from the time of dosing to the time of the last measurable concentration, for a substance administered by intravascular dosing.
MRTlast_iv = AUMClast/AUClast – TI/2, where TI represents infusion duration.


MRTlast

MRTlast

MRTEVLST

time

[if extravascular] Mean residence time from the time of dosing to the time of the last measurable concentration for a substance administered by extravascular dosing.
MRTlast_ev = AUMClast/AUClast – TI/2, where TI represents infusion duration.


AUCall

AUCall

AUCALL

time⋅amount/volume

Area under the curve from the time of dosing to the time of the last observation.

See “AUC calculation” for details.

If the last concentration is positive AUClast=AUCall.
Otherwise, AUCall will not be equal to AUClast as it includes the additional area from the last measurable concentration down to zero or negative observations.

AUCINF_obs

AUC0-inf

AUCIFO

time⋅amount/volume

AUC from Dosing_time extrapolated to infinity, based on the last observed concentration.
AUCINF_obs = AUClast + Clast/Lambda_z


AUCINF_D_obs

AUC0-inf, pred

AUCIFOD

time/volume

AUCINF_obs divided by dose
AUCINF_D_obs = AUCINF_obs/Dose


AUC_PerCentExtrap_obs

% extrapolated AUC

AUCPEO

%

Percentage of AUCINF_obs due to extrapolation from Tlast to infinity.
AUC_%Extrap_obs = 100*(1- AUClast / AUCINF_obs)


AUC_PerCentBack_Ext_obs

% AUC backextrapolated

AUCPBEO

%

Applies only for intravascular bolus dosing. the percentage of AUCINF_obs that was due to back extrapolation to estimate C(0).


AUMCINF_obs

AUMC0-inf

AUMCIFO

time2⋅amount/volume

Area under the first moment curve to infinity using observed Clast
AUMCINF_obs = AUMClast + (Clast/Lambda_z)*(Tlast + 1.0/Lambda_z)


AUMC_PerCentExtrap_obs

% extrapolated AUMC

AUMCPEO

%

Extrapolated (% or total) area under the first moment curve to infinity using observed Clast
AUMC_%Extrap_obs = 100*(1- AUMClast / AUMCINF_obs)


MRTINF_obs

MRT0-inf

MRTIVIFO

time

[if intravascular] Mean Residence Time extrapolated to infinity for a substance administered by intravascular dosing using observed Clast
MRTINF_obs_iv = AUMCINF_obs/AUCINF_obs- TI/2, where TI represents infusion duration.


MRTINF_obs


MRTEVIFO

time

[if extravascular] Mean Residence Time extrapolated to infinity for a substance administered by extravascular dosing using observed Clast
MRTINF_obs_ev = AUMCINF_obs/AUCINF_obs


Vz_F_obs

Vd/F

VZFO

volume

[if extravascular] Volume of distribution associated with the terminal phase divided by F (bioavailability)
Vz_F_obs = Dose/Lambda_z/AUCINF_obs


Cl_F_obs

CL/F

CLFO

volume/time

[if extravascular] Clearance over F (based on observed Clast)
Cl_F_obs = Dose/AUCINF_obs


Vz_obs

Vd

VZO

volume

[if intravascular] Volume of distribution associated with the terminal phase
Vz_obs= Dose/Lambda_z/AUCINF_obs


Cl_obs

CL

CLO

volume/time

 [if intravascular] Clearance (based on observed Clast)
Cl_obs = Dose/AUCINF_obs


Vss_obs

Vss

VSSO

volume

 [if intravascular] An estimate of the volume of distribution at steady state based last observed concentration.
Vss_obs = MRTINF_obs*Cl_obs


Clast_pred

Ctlast

amount/volume

Clast_pred = exp(Lambda_z_intercept- Lambda_z* Tlast)
The values alpha (corresponding to the y-intercept obtained when calculating λz) and lambda_z are those values found during the regression
for λz


AUCINF_pred

AUC0-inf, pred

AUCIFP

time⋅amount/volume

Area under the curve from the dose time extrapolated to infinity, based on the last predicted concentration, i.e., concentration at the final observation time estimated using the linear regression performed to estimate λz.
AUCINF_pred = AUClast + Clast_pred/Lambda_z


AUCINF_D_pred

AUC0-inf, pred/Dose

AUCIFPD

time/volume

AUCINF_pred divided by dose
= AUCINF_pred/Dose


AUC_PerCentExtrap_pred

% extrapolated AUCpred

AUCPEP

%

Percentage of AUCINF_pred due to extrapolation from Tlast to infinity
AUC_%Extrap_pred = 100*(1- AUClast / AUCINF_pred)


AUC_PerCentBack_Ext_pred

% AUC backextrapolatedpred

AUCPBEP

%

Applies only for intravascular bolus dosing. The percentage of AUCINF_pred that was due to back extrapolation to estimate C(0).


AUMCINF_pred

AUMC0-inf, pred

AUMCIFP

time2⋅amount/volume

Area under the first moment curve to infinity using predicted Clast
AUMCINF_pred = AUMClast + (Clast_pred/Lambda_z)*(Tlast+1/Lambda_z)


AUMC_PerCentExtrap_pred

% extrapolated AUMCpred

AUMCPEP

%

Extrapolated (% or total) area under the first moment curve to infinity using predicted Clast
AUMC_%Extrap_pred = 100*(1- AUMClast / AUMCINF_pred)


MRTINF_pred

MRT0-inf, pred

MRTIVIFP

time

[if intravascular] Mean Residence Time extrapolated to infinity for a substance administered by intravascular dosing using predicted Clast


MRTINF_pred


MRTEVIFP

time

[if extravascular] Mean Residence Time extrapolated to infinity for a substance administered by extravascular dosing using predicted Clast


Vz_F_pred

Vd, pred/F

VZFP

volume

[if extravascular] Volume of distribution associated with the terminal phase divided by F (bioavailability)
= Dose/Lambda_z/AUCINF_pred


Cl_F_pred

CL/Fpred

CLFP

volume/time

[if extravascular] Clearance over F (using predicted Clast)
Cl_F_pred = Dose/AUCINF_pred


Vz_pred

Vd,pred

VZP

volume

[if intravascular] Volume of distribution associated with the terminal phas
Vz_pred = Dose/Lambda_z/AUCINF_pred


Cl_pred

CLpred

CLP

volume/time

[if intravascular] Clearance (using predicted Clast)
= Dose/AUCINF_pred


Vss_pred

Vss, pred

VSSP

volume

[if intravascular] An estimate of the volume of distribution at steady state based on the last predicted concentration.
Vss_pred = MRTINF_pred*Cl_pred


AUC_T1_T2

AUCt1-t2

AUCINT

time⋅amount/volume

AUC from T1 to T2 (partial AUC)


AUC_T1_T2_D

AUCt1-t2 /Dose

AUCINTD

time/volume

AUC from T1 to T2 (partial AUC) divided by Dose


CAVG_T1_T2

Cavg t1-t2

CAVGINT

amount/volume

Average concentration from T1 to T2


In the case of repeated doses, dedicated parameters are used to define the steady state parameters and some specific formula should be considered for the clearance and the volume for example. Notice that all the calculation dedicated to the area under the first moment curve (AUMC) are not relevant.

PKANALIX NAME

DEFAULT ALIAS

PKPARMCD CDISC

UNITS

DESCRIPTION

Tau

Tau

time

The (assumed equal) dosing interval for steady-state data.

Ctau

Ctau

CTAU

amount/volume

Concentration at end of dosing interval.
If the observed concentration does not exist, the value is interpolated. It it cannot be interpolated, it is extrapolated using lambda_z. If lambda_z has not been computed, it is extrapolated as the last observed value.

Ctrough

Ctrough

CTROUGH

amount/volume

Concentration at end of dosing interval.
If the observed concentration does not exist, the value is NaN.

AUC_TAU

AUCtau

AUCTAU

time⋅amount/volume

The area under the curve (AUC) for the defined interval between doses (TAU). The calculation depends on the Integral method setting.

AUC_TAU_D

AUCtau/Dose

AUCTAUD

time/volume

The area under the curve (AUC) for the defined interval between doses (TAU) divided by the dose.
AUC_TAU_D = AUC_TAU/Dose

AUC_TAU_PerCentExtrap

% extrapolated AUCtau

%

 Percentage of AUC due to extrapolation in steady state.

 AUC_TAU_%Extrap = 100*(AUC [Tlast, tau] if Tlast<=tau)/AUC_TAU;

AUMC_TAU

AUMCtau

AUMCTAU

time2⋅amount/volume

The area under the first moment curve (AUMC) for the defined interval between doses (TAU).

Vz_F

Vd/F or Vd, SS/F

VZFTAU

volume

[if extravascular] The volume of distribution associated with the terminal slope following extravascular administration divided by the fraction of dose absorbed, calculated using AUC_TAU.
Vz_F =  Dose/Lambda_z/AUC_TAU 

Vz

Vd or Vd, SS

VZTAU

volume

[if intravascular] The volume of distribution associated with the terminal slope following intravascular administration, calculated using AUC_TAU.
Vz =  Dose/Lambda_z/AUC_TAU 

CLss_F

CLss/F

CLFTAU

volume/time

[if extravascular] The total body clearance for extravascular administration divided by the fraction of dose absorbed, calculated using AUC_TAU .
CLss_F =  Dose/AUC_TAU 

CLss

CLss

CLTAU

volume/time

[if intravascular] The total body clearance for intravascular administration, calculated using AUC_TAU.
CLss =  Dose/AUC_TAU 

Cavg

Cavg

CAVG

amount/volume

AUCTAU divided by Tau.
Cavg = AUC_TAU /Tau

FluctuationPerCent

(Cmax-Cmin)/Cavg %

FLUCP

%

The difference between Cmin and Cmax standardized to Cavg, between dose time and Tau.
Fluctuation%  = 100.0* (Cmax -Cmin)/Cavg 

FluctuationPerCent_Tau

(Cmax-Ctau)/Cavg %

%

The difference between Ctau and Cmax standardized to Cavg, between dose time and Tau.
Fluctuation% _Tau  = 100.0* (Cmax -Ctau)/Cavg

Accumulation_Index

Accumulation index

AILAMZ

unitless

Theoretical accumulation ratio: Predicted accumulation ratio for area under the curve (AUC) calculated using the Lambda z estimated from single dose data.
Accumulation_Index = 1.0/(1.0 -exp(-Lambda_z*Tau))

Swing

(Cmax-Cmin)/Cmin

unitless

The degree of fluctuation over one dosing interval at steady state
Swing = (Cmax -Cmin)/Cmin

Swing_Tau

(Cmax-Ctau)/Ctau

unitless

Swing_Tau = (Cmax -Ctau)/Ctau

Tmin

Tmin

TMIN

time

Time of minimum concentration sampled during a dosing interval.

Cmin

Cmin

CMIN

amount/volume

Minimum observed concentration between dose time and dose time + Tau.

Cmax

Cmax or Cmax, SS

CMAX

amount/volume

Maximum observed concentration between dose time and dose time + Tau.

MRTINF_obs

MRT0-inf or MRT0-inf, SS

MRTIVIFO or MRTEVIFO

time

Mean Residence Time extrapolated to infinity using predicted Clast, calculated using AUC_TAU.

PKANALIX NAME

DEFAULT ALIAS

PKPARMCD CDISC

UNITS

DESCRIPTION

T0

T0


time

Time of the last administered dose (assumed to be zero unless
otherwise specified).

Dose

Dose

amount

Amount of the dose

N_Samples

Number of samples

unitless

Number of samples in the individuals.

Tlag

Tlag

TLAG

time

Midpoint prior to the first measurable (non-zero) rate.

Tmax_Rate

Tmax

ERTMAX

time

Midpoint of collection interval associated with the maximum observed excretion rate.

Max_Rate

Ratemax

ERMAX

amount/time

Maximum observed excretion rate.

Mid_Pt_last

Last midpoint

ERTLST

time

Midpoint of collection interval associated with Rate_last.

Rate_last

Ratelast

ERLST

amount/time

Last measurable (positive) rate.

AURC_last

AURC0-tlast

AURCLST

amount

Area under the urinary excretion rate curve from time 0 to the last
measurable rate.

AURC_last_D

AURC0-tlast /Dose

AURCLSTD

unitless

The area under the urinary excretion rate curve (AURC) from time zero to the last measurable rate, divided by the dose.

Vol_UR

Sum of urine volume

VOLPK

volume

Sum of Urine Volumes

Amount_Recovered

Amount recovered


amount

Cumulative amount eliminated.

Percent_Recovered

% recovered


%

100*Amount_Recovered/Dose

AURC_all

AURCall

AURCALL

amount

Area under the urinary excretion rate curve from time 0 to the last rate. This equals AURC_last if the last rate is measurable.

AURC_INF_obs

AURC0-inf

AURCIFO

amount

Area under the urinary excretion rate curve extrapolated to infinity, based on the last observed excretion rate.

AURC_PerCentExtrap_obs

% extrapolated AURC

AURCPEO

%

Percent of AURC_INF_obs that is extrapolated

AURC_INF_pred

AURC0-inf, pred

AURCIFP

amount

Area under the urinary excretion rate curve extrapolated to infinity, based on the last predicted excretion rate.

AURC_PerCentExtrap_pred

% extrapolated AURCpred

AURCPEP

%

Percent of AURC_INF_pred that is extrapolated

AURC_T1_T2

AURCt1-t2

AURCINT

amount

The area under the urinary excretion rate curve (AURC) over the interval from T1 to T2.

AURC_T1_T2_D

AURCt1-t2/Dose

AURCINTD

unitless

The area under the urinary excretion rate curve (AURC) over the interval from T1 to T2 divided by Dose

Rate_last_pred

Ratelast, pred

amount/time

The values alpha and Lambda_z are those values found during the regression
for lambda_z

PKANALIX NAME

DEFAULT ALIAS

UNITS

DESCRIPTION

SE_Cmax

SECmax

amount/volume

Sample standard error of the concentration values at Tmax (standard deviation of the y-values at time Tmax divided by the square root of the number of observations at Tmax)

SE_AUClast

SEAUClast

time⋅amount/volume

with

and

where:

  • = time of last measurable (positive) mean concentration

  • = number of individuals sampled at both times i and j

  • = number of individuals sampled at time i

  • = sample variance of concentrations at time i

  • = sample covariance between concentrations and for all individuals k that are sampled at both times i and j

SE_AUCall

SEAUCall

time⋅amount/volume

Same as SE_AUClast with m = last observation time

SE_Max_Rate

SEMax_Rate

amount/time

Same as SE_Cmax with excretion rates

SE_AURC_last

SEAURC_last

amount

Same as SE_AUClast with excretion rates

SE_AURC_all

SEAURC_all

amount

Same as SE_AUCall with excretion rates

SE_AUClast, SE_AUCall, SE_AURC_last, SE_AURC_all are available only if the integral method is “linear trapezoidal linear” or “linear trapezoidal linear/log” (because the formula is based on linear calculation of AUC).

Parameter renamings

Starting from the 2023 version of MonolixSuite, default parameter names used in results tables and plots in the graphical user interface and reports do not match the names present in the Name column of the tables above. The names that are used can be customized in the NCA parameters renamings section of Preferences. The section contains two columns:

  • Parameter – this column contains parameter names from the tables above,

  • Alias – this column contains parameter names used in the interface and the values in cells can be changed.


image-20240703-130014.png


The Alias column is prefilled with default aliases. By clicking on an alias, PKanalix allows users to input characters. There are several options present, when in the input mode:

  • Undo image-20240528-154419.png – reverse the last action,

  • Redo image-20240528-154500.png – redo an undone action,

  • Subscript image-20240528-154506.png – formats selected text and subsequently entered characters as subscript,

  • Superscript image-20240528-154510.png – formats selected text and subsequently entered characters as superscript,

  • CF image-20240528-154516.png – clears formatting of a selected text,

  • Cancel image-20240528-154521.png – cancels the changes and restores the alias,

  • Accept image-20240528-154524.png – accepts the changes (changes can be accepted by clicking anywhere in the interface as well).

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