List of reporting keywords

Keyword

Description

Possible values

%SAEM_nbBurningIterations%

Number of iterations in the burn-in phase.

a number

%SAEM_nbExploratoryIterations%

If “exploratoryAutoStop” is set to FALSE, it is the number of iterations in the exploratory phase. Else, if “exploratoryAutoStop” is set to TRUE, it is the maximum of iterations in the exploratory phase.

a number

%SAEM_exploratoryAutoStop%

Whether exploratory autostop was used.

used / not used

%SAEM_exploratoryInterval%

Minimum number of interation in the exploratory phase.

a number

%SAEM_nbSmoothingIterations%

If “smoothingAutoStop” is set to FALSE, it is the number of iterations in the smoothing phase. Else, if “smoothingAutoStop” is set to TRUE, it is the maximum of iterations in the smoothing phase.

a number

%SAEM_smoothingAutoStop%

Whether smoothing autostop was used.

used / not used

%SAEM_smoothingInterval%

Minimum number of interation in the smoothing phase. Used only if “smoothingAutoStop” is TRUE.

a number

%SAEM_simulatedAnnealing%

Whether simulated annealing was used.

used / not used

%SAEM_decreasingRateResError%

Simulated annealing decreasing rate for the variance of the residual errors.

a number

%SAEM_decreasingRateIndivParam%

Simulated annealing decreasing rate for the variance of the individual parameters.

a number

%SAEM_withoutVariabilityMethod%

Method for parameters without variability.

variability at first stage / decreasing variability / no variability

%CondDist_nbMaxIterations%

Maximum number of iterations for conditional distribution sampling.

a number

%CondDist_nbSimulatedParameters%

Number of samples from the conditional distribution per individual.

a number

%CondDist_intervalLength%

Interval length for MCMC convergence assessment.

a number

%CondDist_relIntervalWidth%

Relative interval width for MCMC convergence assessment.

a number

%EBEs_nbMaxIterations%

Maximum number of optimization iterations for EBEs task.

a number

%EBEs_optimizationTolerance%

Optimization tolerance for EBEs task.

a number

%SE_nbMaxIterations%

Maximum number of optimization iterations for Standard Errors task.

a number

%SE_nbMinIterations%

Minimum number of optimization iterations for Standard Errors task.

a number

%LL_nbFixedIterations%

Monte Carlo size for the LL task.

a number

%LL_degreesFreedom%

Degrees of freedom of the t-distribution.

5 (fixed) or 1, 2, 5, 10 (optimized)

%Global_seed%

Seed used in the project.

a number

%MCMC_transitionKernels%

Number of calls for each one of the three MCMC kernels.

number-number-number (e.g., 2-2-2)

%MCMC_acceptanceRatio%

Target acceptance ratio for MCMC.

a number

%MCMC_nbChains%

Computed number of chains if not automatically set.

a number

%MCMC_minIndivForChains%

Minimum number of individuals for chains if automatically set.

a number

%TotalNbSubjects%

Total number of subjects in the data set (all observation ids together).

a number

%TotalNbSubjectsOcc%

Total number of subjects-occasions in the dataset (all observation ids together).

a number

%AvgNbDosesPerSubject%

Average number of doses per subject (any administration id, any occasion, all observation ids).

a number

%TotalNbObservations%

Total number of observations in the data set.

if one obs id, number, if several obs id, PK: xx, PD: xx

%AvgNbObservationsPerID%

Average number of observations per id (all occasions together).

if one obs id, number, if several obs id, PK: xx, PD: xx

%MinNbObservationsPerID%

Minimum number of observations per id (all occasions together).

if one obs id, number, if several obs id, PK: xx, PD: xx

%MaxNbObservationsPerID%

Maximum number of observations per id (all occasions together).

if one obs id, number, if several obs id, PK: xx, PD: xx

%PercentCensoredObservations%

Percentage of censored observations.

if one obs id, number, if several obs id, PK: xx, PD: xx

%StructModelCode%

Mlxtran code for the structural model.

whole structural model file content, as shown in the Structural model tab

%reportGenerationDateTime(yyyy-MM-dd HH:mm:ss)%

Report generation date and time. Part of yyyy-MM-dd HH:mm:ss can be removed or reordered.

yyyy-MM-dd HH:mm:ss

%system%

Operating system on which report was generated.

Linux, macOS, Windows

%version%

Version of Monolix with which report was generated.

2023R1

%project_fileName%

File name of the project (without path).

Example:
NCA_run.pkx

%project_filePath%

File path of the project.

Example:
C:/Users/user/lixoft/monolix/monolix2024R1/demos/1.creating_and_using_models/1.1.libraries_of_models/theophylline_project.mlxtran

%data_fileName%

File name of the data set (without path).

Example:
data.csv